CWLDotNet 0.1.0

CWLDotNet

该项目包含由 https://github.com/common-workflow-language/schema_salad 自动生成的 .Net 对象和工具，用于解析与 https://w3id.org/cwl/cwl 架构相对应的文档

用法

加载文档

// Specify the CWL file to load
Uri fileUri = new Uri(Path.GetFullPath("my-cwl-document.cwl"));

// Read the file contents 
string fileContent = System.IO.File.ReadAllText(fileUri.AbsolutePath);

// Parse the CWL document
var doc = CWLDotNet.RootLoader.LoadDocument(fileContent, fileUri.AbsoluteUri);

// Work with the document
doc.Switch(
    CommandLineTool => Console.WriteLine("The loaded document is a CommandLineTool"),
    ExpressionTool => Console.WriteLine("The loaded document is a ExpressionTool"),
    Workflow => Console.WriteLine("The loaded document is a Workflow"),
    Operation => Console.WriteLine("The loaded document is an Operation"),
    ListOf => Console.WriteLine("This is a list of one of: CommandLineTool | ExpressionTool | Workflow | Operation")
);

创建、编辑和序列化文档

using System.Text.Json;
using CWLDotNet;

// Create a CommandLineTool with empty inputs and outputs
CommandLineTool mytool = new CommandLineTool(new(),new());

// Set the base command
mytool.baseCommand = "echo";

// Create an input parameter with a default value
CommandInputParameter input1 = new CommandInputParameter(CWLType.INT);
input1.default_ = "Hello World!";

// Add the input to the tool
mytool.inputs.Add(input1);

// Serialize the tool
string outDoc = JsonSerializer.Serialize(mytool.Save());

文档

完整的文档（由DocFX自动生成），可以在此链接以下找到： https://common-workflow-lab.github.io/CWLDotNet/

局限性

CWLDotNet 只支持 CWL v1.2 语法。其他文档需要使用cwl-upgrader进行升级。

维护者

@ZimmerA